An Online Informatics Resource for Dictyostelium
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Citing dictyBase and the Dictyostelium Genome Project

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Gene Information
dictyBase ID, gene names, synonyms, and gene products (Updated monthly) [view]
[tab-delimited] [excel]
DDB-DDB_G-UniProt mapping (Updated monthly)
[tab-delimited]
DDB_G curation status (Updated monthly)
[tab delimited]
Curated Model History (Updated weekly)
[zip file (tab delimited)]

Dictyostelium Sequences and Annotations
Sequences in FASTA format (Updated weekly)[download area]
Sequences and annotations in GFF3 format (Updated monthly)[zip file]
Promoter sequences (5' flanking sequence up to next gene) (March 30, 2006)[zip file]

Genes on AX3/AX4 Chromosome 2 Duplication (Updated May 15, 2009)
In strains AX3 and AX4 (the sequenced strain represented in dictyBase), chromosome 2 contains a duplication of approximately 750 kb, in which the region from base 2263132 to 3015703 is repeated between bases 3016083 and 3768654. This duplication is not found in AX2.[view]

Mutant Phenotypes
All curated mutants[view]
[tab-delimited] [excel]
Null mutants[view]
[tab-delimited] [excel]
Overexpression mutants[view]
[tab-delimited] [excel]
Multiple mutants[view]
[tab-delimited] [excel]
Mutants with developmental defects[view]
[tab-delimited] [excel]
Other mutants[view]
[tab-delimited] [excel]
Insertional Mutants at BCM[view]
[tab-delimited] [excel]

Dictyostelium Anatomy Ontology (Gaudet, Williams, Fey and Chisholm, 2008)
Terms used to describe Dictyostelium[overview]
[OBO file]

Dictyostelium Phenotype Ontology (Updated monthly)
Terms used to annotate Dictyostelium Phenotypes[view]
[OBO file]

Protein Domains
InterPro domains of Dictyostelium proteins (Updated once in three months)[tab-delimited] [excel]
N-terminal myristoylation sites (July 2006)[view]
[tab-delimited] [excel]

GO Association File
Gene Ontology annotations (Updated weekly) [gzip file]
GO annotations mapped to GO-slim.obo (August 2006)[text file]

References
Franke Dictyostelium Reference Library:
Complete Dictyostelium literature in EndNote and BiblX formats (Update info)		[download area]
List of PubMed IDs and associated genes (Updated monthly) [tab-delimited] [excel]
List of High throughput papers and associated genes (Updated monthly) [tab-delimited]
List of Reviews and associated genes (Updated monthly) [tab-delimited]
List of Papers excluding Reviews and High throughput papers and associated genes (Updated monthly) [tab-delimited]

Tools
Third party and other tools[download area]
ID converter[Access the tool]
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